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NAMD Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• AGroup
• ALambdaControl
• ALambdaManager
• angle
• angle_params
• AngleElem
• AngleTable
• AngleValue
• ARestraint
  • ADiheRestraint
    • ABoundDiheRestraint
    • AFixedDiheRestraint
    • AForcingDiheRestraint
  • ADistRestraint
    • ABoundDistRestraint
    • AFixedDistRestraint
    • AForcingDistRestraint
  • AnAngleRestraint
    • ABoundAngleRestraint
    • AFixedAngleRestraint
    • AForcingAngleRestraint
  • APosRestraint
    • ABoundPosRestraint
    • AFixedPosRestraint
    • AForcingPosRestraint
• ARestraintManager
• Array< Elem, Size >
  • MathArray< Elem, Size >
• atom_constants
• atom_name_info
• AtomMap
• AtomTable
• AVector
• BackEnd
• BOCclass
  • BroadcastMgr
  • CollectionMgr
  • ComputeExtMgr
  • ComputeMgr
  • ComputePmeMgr
  • LdbCoordinator
  • Node
  • PatchMgr
  • ProxyMgr
  • ReductionMgr
  • Sync
  • WorkDistrib
• BOCgroup
• BOID
• bond
• bond_params
• BondElem
• BondTable
• BondValue
• Box< Owner, Data >
• BroadcastClient
  • SimpleBroadcastObject< T >
• BroadcastClientElem
• BroadcastMsg
• CollectionMaster
• CollectionMaster::CollectVectorInstance
• CollectionMaster::CollectVectorSequence
• CollectionMgr::CollectVectorInstance
• CollectionMgr::CollectVectorSequence
• CollectVectorMsg
• Communicate
• CompAtom
  • FullAtom
• Compute
  • ComputeHomePatch
  • ComputeHomePatches
    • ComputeExt
    • ComputeFullDirect
    • ComputeGlobal
    • ComputePme
  • ComputeHomeTuples< T, S, P >
    • ComputeSelfTuples< T, S, P >
  • ComputeHomeTuples< AngleElem, Angle, AngleValue >
    • ComputeAngles
    • ComputeSelfTuples< AngleElem, Angle, AngleValue >
      • ComputeSelfAngles
  • ComputeHomeTuples< BondElem, Bond, BondValue >
    • ComputeBonds
    • ComputeSelfTuples< BondElem, Bond, BondValue >
      • ComputeSelfBonds
  • ComputeHomeTuples< DihedralElem, Dihedral, DihedralValue >
    • ComputeDihedrals
    • ComputeSelfTuples< DihedralElem, Dihedral, DihedralValue >
      • ComputeSelfDihedrals
  • ComputeHomeTuples< ImproperElem, Improper, ImproperValue >
    • ComputeImpropers
    • ComputeSelfTuples< ImproperElem, Improper, ImproperValue >
      • ComputeSelfImpropers
  • ComputePatch
    • ComputeConsForce
    • ComputeConsTorque
    • ComputeCylindricalBC
    • ComputeEField
    • ComputeNonbondedSelf
    • ComputeRestraints
    • ComputeSphericalBC
  • ComputePatchPair
    • ComputeNonbondedPair
• ComputeDPMEDataMsg
• ComputeDPMEResultsMsg
• ComputeGlobalConfigMsg
• ComputeGlobalDataMsg
• ComputeGlobalResultsMsg
• ComputeMap
• ComputeMap::ComputeData
• ComputeMap::PatchRec
• ComputeMapChangeMsg
• ComputeNonbondedUtil
  • ComputeNonbondedPair
  • ComputeNonbondedSelf
• ConfigList
• ConfigList::ConfigListNode
• Controller
• ControllerBroadcasts
• datastream
• DataStreamMsg
• dihedral
• dihedral_params
• DihedralElem
• DihedralTable
• DihedralValue
• doublecomplex
• Entry< Elem >
• Entry< AngleElem >
• Entry< BondElem >
• Entry< DihedralElem >
• Entry< ImproperElem >
• Entry< TuplePatchElem >
• EntryGlob< Elem >
• EntryGlob< AngleElem >
• EntryGlob< BondElem >
• EntryGlob< DihedralElem >
• EntryGlob< ImproperElem >
• EntryGlob< TuplePatchElem >
• Exclusion
• ExclusionCheck
• ExtCoordMsg
• ExtForce
• ExtForceMsg
• FileStack
• Flags
• FloatVector
• four_body_consts
• GenericAngle
• GenericAtom
• GenericBond
• GenericDihedral
• GenericMol
• GlobalMaster
  • GlobalMasterEasy
    • GlobalMasterMisc
  • GlobalMasterFreeEnergy
  • GlobalMasterIMD
  • GlobalMasterSMD
  • GlobalMasterTcl
  • GlobalMasterTest
• GlobalMasterServer
• GromacsTopFile
• GroupInitMsg
• heapIterator
• heapRecord
• HomePatchElem
• HydrogenGroupID
• IMDEnergies
• IMDheader
• IMDOutput
• improper
• improper_params
• ImproperElem
• ImproperValue
• indexed_vdw_pair
• InfoRecord
  • computeInfo
  • patchInfo
  • processorInfo
• infostream
• Iterator
• Lattice
• LdbMigrateMsg
• listNode
• LJTable
• LJTable::TableEntry
• LocalID
• LocalPmeInfo
• LocalWorkMsg
• main
• MapDistribMsg
• maxHeap
• memusageinit
• MigrateAtomsCombinedMsg
• MigrateAtomsMsg
• MigrationInfo
• minHeap
• minpoint
• MIStream
• Molecule
• MolInst
• MOStream
• MoveAtomMsg
• MovePatch
• MovePatchesMsg
• NamdCentLB
• NamdNborLB
• NamdState
• nodesort
• nonbonded
• NonbondedExclValue
• ObjectArena< Type >
• Output
• OwnerBox< Owner, Data >
• PAL
• Parameters
• parm
• ParseOptions
• ParseOptions::DataElement
• Patch
  • HomePatch
  • ProxyPatch
• PatchElem
• PatchMap
• PDB
• PDBData
  • PDBAtom
    • PDBAtomRecord
    • PDBHetatm
  • PDBUnknown
• PmeGrid
• PmeGridMsg
• PmeKSpace
• PmeParticle
• PmeRealSpace
• PmeTransMsg
• PmeUntransMsg
• PositionBox< Owner >
• PositionOwnerBox< Owner >
• ProxyAllMsg
• ProxyAtomsMsg
• ProxyCombinedResultMsg
• ProxyDataMsg
• ProxyElem
• ProxyListElem
• ProxyResultMsg
• ProxySpanningTreeMsg
• Random
• Rebalancer
  • Alg7
  • AlgNbor
  • AlgRecBisection
  • RefineOnly
• RecBisection
• ReductionRegisterMsg
• ReductionSet
• ReductionSetData
• ReductionSubmitMsg
• RegisterProxyMsg
• RequireReduction
• ResidueLookupElem
• ResizeArray< Elem >
  • SortableResizeArray< Elem >
    • SortedArray< Elem >
      • UniqueSortedArray< Elem >
• ResizeArrayIter< T >
• ResizeArrayPrimIter< T >
• ResizeArrayRaw< Elem >
• Results
• ScriptParamMsg
• ScriptTcl
• Sequencer
• Set
• SimParameters
• SlaveInitMsg
• StreamMessage
• StringList
• SubmitReduction
• TaggedMsg
• Tensor
• Transform
• TuplePatchElem
• UniqueSet< Elem >
• UniqueSet< AngleElem >
• UniqueSet< BondElem >
• UniqueSet< DihedralElem >
• UniqueSet< ImproperElem >
• UniqueSet< TuplePatchElem >
• UniqueSetIter< T >
• UniqueSetRaw< Elem >
• UniqueSetRaw< AngleElem >
• UniqueSetRaw< BondElem >
• UniqueSetRaw< DihedralElem >
• UniqueSetRaw< ImproperElem >
• UniqueSetRaw< TuplePatchElem >
• UnregisterProxyMsg
• vdw_pair_params
• vdw_params
• vdw_val
• VDWTable
• Vector
  • zVector
• vmdforce

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