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NAMD Compound Index

A	ComputeSelfImpropers	nodesort
ABoundAngleRestraint	ComputeSelfTuples	nonbonded
ABoundDiheRestraint	ComputeSphericalBC	NonbondedExclValue
ABoundDistRestraint	ConfigList	O
ABoundPosRestraint	ConfigList::ConfigListNode	ObjectArena
ADiheRestraint	Controller	Output
ADistRestraint	ControllerBroadcasts	OwnerBox
AFixedAngleRestraint	D	P
AFixedDiheRestraint	datastream	PAL
AFixedDistRestraint	DataStreamMsg	Parameters
AFixedPosRestraint	dihedral	parm
AForcingAngleRestraint	dihedral_params	ParseOptions
AForcingDiheRestraint	DihedralElem	ParseOptions::DataElement
AForcingDistRestraint	DihedralTable	Patch
AForcingPosRestraint	DihedralValue	PatchElem
AGroup	doublecomplex	patchInfo
ALambdaControl	E	PatchMap
ALambdaManager	Entry	PatchMgr
Alg7	EntryGlob	PDB
AlgNbor	Exclusion	PDBAtom
AlgRecBisection	ExclusionCheck	PDBAtomRecord
AnAngleRestraint	ExtCoordMsg	PDBData
angle	ExtForce	PDBHetatm
angle_params	ExtForceMsg	PDBUnknown
AngleElem	F	PmeGrid
AngleTable	FileStack	PmeGridMsg
AngleValue	Flags	PmeKSpace
APosRestraint	FloatVector	PmeParticle
ARestraint	four_body_consts	PmeRealSpace
ARestraintManager	FullAtom	PmeTransMsg
Array	G	PmeUntransMsg
atom_constants	GenericAngle	PositionBox
atom_name_info	GenericAtom	PositionOwnerBox
AtomMap	GenericBond	processorInfo
AtomTable	GenericDihedral	ProxyAllMsg
AVector	GenericMol	ProxyAtomsMsg
B	GlobalMaster	ProxyCombinedResultMsg
BackEnd	GlobalMasterEasy	ProxyDataMsg
BOCclass	GlobalMasterFreeEnergy	ProxyElem
BOCgroup	GlobalMasterIMD	ProxyListElem
BOID	GlobalMasterMisc	ProxyMgr
bond	GlobalMasterServer	ProxyPatch
bond_params	GlobalMasterSMD	ProxyResultMsg
BondElem	GlobalMasterTcl	ProxySpanningTreeMsg
BondTable	GlobalMasterTest	R
BondValue	GromacsTopFile	Random
Box	GroupInitMsg	Rebalancer
BroadcastClient	H	RecBisection
BroadcastClientElem	heapIterator	ReductionMgr
BroadcastMgr	heapRecord	ReductionRegisterMsg
BroadcastMsg	HomePatch	ReductionSet
C	HomePatchElem	ReductionSetData
CollectionMaster	HydrogenGroupID	ReductionSubmitMsg
CollectionMaster::CollectVectorInstance	I	RefineOnly
CollectionMaster::CollectVectorSequence	IMDEnergies	RegisterProxyMsg
CollectionMgr	IMDheader	RequireReduction
CollectionMgr::CollectVectorInstance	IMDOutput	ResidueLookupElem
CollectionMgr::CollectVectorSequence	improper	ResizeArray
CollectVectorMsg	improper_params	ResizeArrayIter
Communicate	ImproperElem	ResizeArrayPrimIter
CompAtom	ImproperValue	ResizeArrayRaw
Compute	indexed_vdw_pair	Results
ComputeAngles	InfoRecord	S
ComputeBonds	infostream	ScriptParamMsg
ComputeConsForce	Iterator	ScriptTcl
ComputeConsTorque	L	Sequencer
ComputeCylindricalBC	Lattice	Set
ComputeDihedrals	LdbCoordinator	SimParameters
ComputeDPMEDataMsg	LdbMigrateMsg	SimpleBroadcastObject
ComputeDPMEResultsMsg	listNode	SlaveInitMsg
ComputeEField	LJTable	SortableResizeArray
ComputeExt	LJTable::TableEntry	SortedArray
ComputeExtMgr	LocalID	StreamMessage
ComputeFullDirect	LocalPmeInfo	StringList
ComputeGlobal	LocalWorkMsg	SubmitReduction
ComputeGlobalConfigMsg	M	Sync
ComputeGlobalDataMsg	main	T
ComputeGlobalResultsMsg	MapDistribMsg	TaggedMsg
ComputeHomePatch	MathArray	Tensor
ComputeHomePatches	maxHeap	Transform
ComputeHomeTuples	memusageinit	TuplePatchElem
ComputeImpropers	MigrateAtomsCombinedMsg	U
computeInfo	MigrateAtomsMsg	UniqueSet
ComputeMap	MigrationInfo	UniqueSetIter
ComputeMap::ComputeData	minHeap	UniqueSetRaw
ComputeMap::PatchRec	minpoint	UniqueSortedArray
ComputeMapChangeMsg	MIStream	UnregisterProxyMsg
ComputeMgr	Molecule	V
ComputeNonbondedPair	MolInst	vdw_pair_params
ComputeNonbondedSelf	MOStream	vdw_params
ComputeNonbondedUtil	MoveAtomMsg	vdw_val
ComputePatch	MovePatch	VDWTable
ComputePatchPair	MovePatchesMsg	Vector
ComputePme	N	vmdforce
ComputePmeMgr	NamdCentLB	W
ComputeRestraints	NamdNborLB	WorkDistrib
ComputeSelfAngles	NamdState	Z
ComputeSelfBonds	Node	zVector
ComputeSelfDihedrals

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