3rd International Workshop on Theoretical and
Computational Physics (IWTCP-3):
Complex Systems and Interdisciplinary Physics
Đà Lạt, 27-30 July 2015
in association with: 40th National Conference on Theoretical Physics

Program

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Monday, 27 July 2015

08:30 - 10:00 Registration
10:00 - 10:30 Coffee Break
10:30 - 10:40 Opening -- Chair: Trinh Xuan Hoang
10:40 - 12:00 Oral Session 1 -- Chair: Nguyen Ai Viet
10:40 - 11:15 I.1 -- Invited
Density Functional Theory and Fermi Surfaces
Mukunda P. Das (The Australian National University)
11:15 - 11:50 I.2 -- Invited
Quantum field theory of interacting plasmon-photon-phonon system
Nguyen Van Hieu (Vietnam Academy of Science and Technology)
12:00 - 14:00 Lunch Break
14:00 - 15:30 Oral Session 2 -- Chair: Mai Suan Li
14:00 - 14:35 I.3 -- Invited
A rigorous approach to the derivation of analytical potentials in physics-based coarse-grained force fields
Adam Liwo (Faculty of Chemistry, University of Gdansk)
14:35 - 15:10 I.4 -- Invited
Improved prediction of protein complex binding affinities: the role of entropy
Antonio Trovato (University of Padua)
15:10 - 15:30 O.1 -- Oral
Coarse-grained models for the formation of self-limited supraparticle assemblies
Trung D. Nguyen (Institute of Mechanics, Vietnam Academy of Science and Technology)
15:30 - 16:00 Coffee Break
16:00 - 17:30 Oral Session 3 -- Chair: Mukunda Das
16:00 - 16:35 I.5 -- Invited
Thermoelectric effects in graphene nanostructures
Viet-Hung Nguyen (Université Paris-Sud & Institute of Physics)
16:35 - 16:55 O.2 -- Oral
Nonlinear optically detected magnetophonon resonance via two-photon process in parabolic quantum wells
Tran Cong Phong (Vietnam Institute of Educational Sciences)
16:55 - 17:15 O.3 -- Oral
Entanglement and teleportation in the even and odd photon-added charge coherent states
Truong Minh Duc (Hue University of Education)
17:15 - 17:35 O.4 -- Oral
Theoretical evaluation of maximum electric field approximation of direct band-to-band tunneling Kane model for low bandgap semiconductors
Nguyen Dang Chien (Faculty of Physics, University of Da Lat)

Tuesday, 28 July 2015

08:30 - 10:00 Oral Session 4 -- Chair: Adam Liwo
08:30 - 09:05 I.6 -- Invited
Energy transduction and dissipation in biomolecular motors and pumps
Gerhard Hummer (Max Planck Institute of Biophysics)
09:05 - 09:40 I.7 -- Invited
Defining behavior states of indicator animals under stressful or conflict conditions in a confined area
Tae-Soo Chon (Pusan National University)
09:40 - 10:00 O.5 -- Oral
Cellular Organization and Synchronization of Pancreatic Islets
Danh-Tai Hoang (Asia Pacific Center for Theoretical Physics (APCTP))
10:00 - 10:30 Coffee Break
10:30 - 12:00 Oral Session 5 -- Chair: Gerhard Hummer
10:30 - 11:05 I.8 -- Invited
Electrostatics in viruses
Rudolf Podgornik (J. Stefan Institute and University of Ljubljana)
11:05 - 11:40 I.9 -- Invited
Eukaryotic chromatin folding and gene regulation
Masaki Sasai (Nagoya University)
11:40 - 12:00 O.6 -- Oral
Modeling DNA condensates with generalized elastic potential
Trinh Xuan Hoang (Institute of Physics, Vietnam Academy of Science and Technology)
12:00 - 14:00 Lunch Break
14:00 - 18:00 Excursion
18:00 - 20:00 Gala Dinner

Wednesday, 29 July 2015

08:30 - 10:00 Poster Session -- Chair: Nguyen Tri Lan
P.1 -- Poster
Studies on interactions between Ebola viral protein 35 and dsRNA using steered molecular dynamics approach
Nguyen Quy Ngan (Department of Theoretical Physics, Faculty of Physics and Egineering Physics, University of Science)
P.2 -- Poster
Modeling the interactions between putative anticancer bacteriocins and the p53 DNA-binding domain
Pham Thoa (Department of Theoretical Physics, Faculty of Physics, University of Science, Vietnam National University, Ho Chi Minh City, Vietnam)
P.3 -- Poster
Estimation of partial atomic charges of calcite (CaCO3) by Electrostatic Potential Fitting method
Phan Van Cuong (Nha Trang University, Vietnam)
P.4 -- Poster
Fission Product Decay Heat Calculations for Neutron Fission of 232Th
Pham Ngoc Son (Nuclear Research Institute)
P.5 -- Poster
Binding of F-19848 A and Natural Compounds to CD44: Implications to Breast Cancer
Nguyen Trung Tin (Institute of Computational Science and Technology (http://www.icst.org.vn/))
P.6 -- Poster
Thermal neutron radiative capture cross-section of 186W(n,g)187W reaction
Pham Ngoc Son (Nuclear Research Institute)
P.7 -- Poster
Effect of Taiwan mutation (D7H) on structures of amyloid beta peptides: replica exchange molecular dynamics study
Phan Minh Trường (Institute for Computational Science and Technology)
P.8 -- Poster
Calculation of Ettingshausen coefficient in Quantum Well in the presence of Electromagnetic Wave
Dao Thu Hang (People's Police University of Technology and Logistics)
P.9 -- Poster
Transient super-ballistic spreading of wave packets in hybrid ordered-quasiperiodic lattices
Nguyen Ba Phi (Mien Trung University of Civil Engineering)
P.10 -- Poster
First Principles Study on Nickel carbonophosphate Li3NiPO4CO3 for Cathode Materials of rechargeable Li-ion batteries.
Dương Thị Diễm My (Department of Physics, Hue University's College of Education)
P.11 -- Poster
Alzheimer’s Amyloid-$\beta$ Sequesters Caspase-3 via its C-terminal Tail
Nguyen Hoang Linh (Institute for Computational Science and Technology (ICST))
P.12 -- Poster
Preformed template fluctuations promote fibril formation: Insights from lattice and all-atom models
Nguyen Truong Co (Institute for Computational Science and Technology)
P.13 -- Poster
Improved thermoelectric properties of graphene devices by strain and doping engineering
Mai Chung Nguyen (Université Paris-Sud & Institute of Physics)
P.14 -- Poster
Interactions between small molecules and amyloid beta peptides: Implications for Alzheimer’s disease
Ngo Son Tung (Institute of Physics, Polish Academy of Sciences)
P.15 -- Poster
A New Model for the Collective Behavior of Animals
Nguyễn Phước Thể (Duy Tan University)
P.16 -- Poster
A model of optical trapping cold atoms using a metallic nano wire with surface plasmon effect
Nguyen Thi Phuong Lan (Hanoi Pedagogical University 2)
P.17 -- Poster
Dependence of Effective Diffusivities on Boron impurity Concentration in Simultaneous Diffusion Process in Silicon
Vu Ba Dung (Physics Faculty, Hanoi University of Mining and Geology, Ha Noi, Viet Nam)
P.18 -- Poster
THE DEPENDENCE OF MELTING RATE IN HEATING PROCESS OF BORON NITRIDE NANORIBBONS
Nguyen Thi Thuy Hang (Ho Chi Minh City University of Technology)
P.19 -- Poster
Generalized Bogoliubov polariton model with distribution functions for complex systems. Application to stock exchange market
Chu Thuy Anh (Institute of Physics, VAST)
P.20 -- Poster
Pi-plasmon model for carbon nano structures. Application to porphyrin
Chu Thuy Anh (Institute of Physics, VAST)
P.21 -- Poster
On the time-dependent spatial dimension in six dimensional space-time
Phan Hong Lien (Military Technical Academy)
P.22 -- Poster
Prediction of inhibitors of LSD1 protein using molecular modeling and simulation methods
Nguyen Quy Truong (University of Science, HCM city)
P.23 -- Poster
Folding and escape of nascent proteins at ribosomal exit tunnel
Bui Phuong Thuy (Namdinh University of Technology Education)
P.24 -- Poster
Non-additive effects of crowding and confinement on folding stability of proteins
Bui Phuong Thuy (Namdinh University of Technology Education)
P.25 -- Poster
Identification of Potential Drugs for Alzheimer’s Disease by in Silico and in Vitro Experiments
Nguyen Quoc Thai (Dong Thap University)
P.26 -- Poster
First-principles Study on Controlling Energy Gap of Graphene using Hybrid Armchair-Zigzag Structures
Nguyen Tien Cuong (VNU University of Science)
P.27 -- Poster
PROTEIN REFOLDING UNDER AN EXTERNAL MECHANICAL FORCE
Pham Dang Lan (ICST)
P.28 -- Poster
A New Method for Determination of Optimal Pulling Direction for ligand from Binding Pocket: Application to Ranking Binding Affinity by Steered Molecular Dynamics
Vuong Van Quan (The Institute for Computational Science and Technology (ICST))
P.29 -- Poster
Analysis of Binding Affinity of Derivatives of Vitamin K3 to Fibrils of A$\beta$ peptides
Vu Thi Mui (Institute for Computational Science and Technology)
P.30 -- Poster
pH-dependence of UV-visible Spectra of human-Neuroglobin, a sign of structural and dynamical properties based on Two-Level Model
Nguyễn Minh Hoa (Đại học Y Duọc Huế)
P.31 -- Poster
Study of amyloid fibrillation in a simple model
Nguyen Ba Hung (Vietnam Military Medical University & Institute of Physics)
P.32 -- Poster
Simple model for gold nano particles GNPs concentration dependence of Resonance Energy Transfer intensity
Nguyễn Minh Hoa (Đại học Y Duọc Huế)
10:00 - 10:30 Coffee Break
10:30 - 12:00 Oral Session 6 -- Chair: Masaki Sasai
10:30 - 11:05 I.10 -- Invited
One-dimensional diffusion models for protein folding -- how good can they be?
Robert B. Best (National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health)
11:05 - 11:40 I.11 -- Invited
Codon positions that strongly influence cotranslational folding are far from equilibrium: A framework for controlling nascent-protein folding
Edward O'Brien (Pennsylvania State University)
11:40 - 12:00 O.7 -- Oral
Studies on interactions between Ebola virus protein VP35 and its partners using molecular simulation approach
Chuong Nguyen (Ton Duc Thang University)
12:00 - 14:00 Lunch Break
14:00 - 15:30 Oral Session 7 -- Chair: Rudolf Podgornik
14:00 - 14:35 I.12 -- Invited
DNA looping in the presence of divalent counterions, a simulation study using a coarse-grained model of DNA
Toan The Nguyen (VNU University of Science)
14:35 - 15:10 I.13 -- Invited
Emission in Maganese -Doped Semiconductor Nanocrystals
Que-Huong Nguyen (Marshall University)
15:10 - 15:30 O.8 -- Oral
THE EVOLUTION OF MELTING PROCESS OF GRAPHENE NANORIBBONS
Nguyen Thi Thuy Hang (Ho Chi Minh City University of Technology)
15:30 - 16:00 Coffee Break
16:00 - 17:30 Oral Session 8 -- Chair: Robert B. Best
16:00 - 16:35 I.15 -- Invited
Protein aggregation: Key principles and applications
Mai Suan Li (Institute of Physics, Polish Academy of Science & Institute for Computational Science and Technology at Ho Chi Minh City)
16:35 - 16:55 O.9 -- Oral
Molecular Modelling of Alcohol Dehydrogenase from Lactobacillus Brevis in Organic Solvent
Quy Cam Vo (University of Stuttgart)
17:30 - 17:40 Closing

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