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Theoretical Biophysics Group
Development Tools Tutorial April 2001
NIH Resource for Macromolecular Modeling and Bioinformatics
UIUC

Software Development Tutorial, April 2001

On April 3rd, 2001, we held an informal software development tutorial designed to aid researchers in theoretical biophysics and related fields get started with common software development tools and practices.

Brief Outline of Tutorial Topics

  • Always use the right tool for the right job
  • Makefiles: how to use them, what they are good for, common ways that makefiles are used that might surprise the unfamiliar.
  • Compilers, libraries, and optimization flags for many different development platforms. This will include both 32-bit and 64-bit development where appropriate.
  • Debuggers and Debugging Tools: dbx, gdb, purify
  • Performance Measurement Tools: pixie, speedshop, prof, gprof,
  • System Benchmarking Tools: Stream, netperf, lmbench
  • Revision control with CVS (most people already know RCS..) including setting up and using network accessible CVS repositories for yourself.
  • Give a list of web URL's for more information

Tutorial Example Files and Additional Information


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