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SCIE journals
- A Tale of Two Chains: Geometries of a Chain Model and Protein Native State Structures
Tatjana Škrbić, Achille Giacometti, Trinh X. Hoang, Amos Maritan and Jayanth R. Banavar
Polymers 16, 502 (2024) - Energetic preference and topological constraint effects on the formation of DNA twisted toroidal bundles
Nhung T. T. Nguyen, Anh T. Ngo, Trinh Xuan Hoang
Journal of Chemical Physics 158, 114904 (2023) - The protein escape process at the ribosomal exit tunnel has conserved mechanisms across the domains of life
Phuong Thuy Bui, and Trinh Xuan Hoang
Journal of Chemical Physics 158, 015102 (2023) - Electronic properties of twisted multilayer graphene
V Hung Nguyen, Trinh X Hoang and J-C Charlier
Journal of Physics: Materials 5, 034003 (2022) - Proteins — a celebration of consilience
Tatjana Škrbić, Trinh Xuan Hoang, Achille Giacometti, Amos Maritan and Jayanth R. Banavar
International Journal of Modern Physics B 36, 2140051 (2022) - Hydrophobic and electrostatic interactions modulate protein escape at the ribosomal exit tunnel
Phuong Thuy Bui and Trinh Xuan Hoang
Biophysical Journal 120, 4798-4808 (2021) - Marginally compact phase and ordered ground states in a model polymer with side spheres
Tatjana Škrbić, Trinh Xuan Hoang, Achille Giacometti, Amos Maritan, and Jayanth R. Banavar
Physical Review E 104, L012501 (2021) - Spontaneous dimensional reduction and ground state degeneracy in a simple chain model
Tatjana Škrbić, Trinh Xuan Hoang, Achille Giacometti, Amos Maritan, and Jayanth R. Banavar
Physical Review E 104, L012101 (2021) - Protein escape at the ribosomal exit tunnel: Effect of the tunnel shape
Phuong Thuy Bui and Trinh Xuan Hoang
Journal of Chemical Physics 153, 045105 (2020) - Effects of inter-organism interactions in biofouling on microtopographic surfaces
Trinh X. Hoang, Ha T. H. Mai, Anthony B. Brennan & Ly Le
Biofouling 35, 684-695 (2019) - Local symmetry determines the phases of linear chains: a simple model for the self-assembly of peptides
Tatjana Skrbic, Trinh Xuan Hoang, Amos Maritan, Jayanth R. Banavar and Achille Giacometti
Soft Matter 15, 5596-5613 (2019) - Theoretical Model for the Structural Relaxation Time in Coamorphous Drugs
Anh D. Phan, Justyna Knapik-Kowalczuk, Marian Paluch, Trinh X. Hoang, and Katsunori Wakabayashi
Molecular Pharmaceutics 16, 2992−2998 (2019) - The pH-dependent electrostatic interaction of a metal nanoparticle with the MS2 virus-like particles
Anh D. Phan, Trinh X. Hoang
Chemical Physics Letters 730, 84-88 (2019) - The elixir phase of chain molecules
Tatjana Škrbić, Trinh X. Hoang, Amos Maritan, Jayanth R. Banavar, Achille Giacometti
Proteins: Structure, Function and Bioinformatics 87, 176-184 (2019) - Protein escape at the ribosomal exit tunnel: Effects of native interactions, tunnel length, and macromolecular crowding
Phuong Thuy Bui, and Trinh Xuan Hoang
Journal of Chemical Physics 149, 045102 (2018) - Sequence dependent aggregation of peptides and fibril formation
Nguyen Ba Hung, Duy-Manh Le, and Trinh X. Hoang
Journal of Chemical Physics 147, 105102 (2017) - Effective stiffness and formation of secondary structures in a protein-like model
Tatjana Škrbić, Trinh X. Hoang, and Achille Giacometti
Journal of Chemical Physics 145, 084904 (2016) - Transport properties through graphene grain boundaries: strain effects versus lattice symmetry
V. Hung Nguyen, Trinh X. Hoang, P. Dollfus and J.-C. Charlier
Nanoscale 8, 11658 (2016) - From polymers to proteins: the effect of side chains and broken symmetry on the formation of secondary structures within a Wang–Landau approach
Tatjana Skrbic, Artem Badasyan, Trinh Xuan Hoang, Rudolf Podgornik and Achille Giacometti
Soft Matter 12, 4783 (2016) - Folding and escape of nascent proteins at ribosomal exit tunnel
Phuong Thuy Bui and Trinh Xuan Hoang
Journal of Chemical Physics 144, 095102 (2016) - Phase diagram of the ground states of DNA condensates
Trinh X. Hoang, Hoa Lan Trinh, Achille Giacometti, Rudolf Podgornik, Jayanth R. Banavar, and Amos Maritan
Physical Review E (Rapid Communications) 92, 060701(R) (2015) - From toroidal to rod-like condensates of semiflexible polymers
Trinh Xuan Hoang, Achille Giacometti, Rudolf Podgornik, Nhung T. T. Nguyen, Jayanth R. Banavar, and Amos Maritan
JOURNAL OF CHEMICAL PHYSICS 140, 064902 (2014) - Repulsive interactions of a lipid membrane with graphene in composite materials
Anh D. Phan, Trinh X. Hoang, The-Long Phan, and Lilia M. Woods
Journal of Chemical Physics 139, 184703 (2013) - Surface plasmon resonances of protein-conjugated gold nanoparticles on graphitic substrates
Anh D. Phan, Trinh X. Hoang, Thi H. L. Nghiem, and Lilia M. Woods
Applied Physics Letters 103, 163702 (2013) - Sequence repeats and protein structure
Trinh X. Hoang, Antonio Trovato, Flavio Seno, Jayanth R. Banavar, and Amos Maritan
Phys. Rev. E (Rapid Communications) 86, 050901(R) (2012) - Shapes of hydrophobic thick membranes
Trinh X. Hoang, Jayanth R. Banavar and Amos Maritan
EPL 98, 56006 (2012)
[Editor's choice] - Protein Sequence and Structure: Is One More Fundamental than the Other?
Jayanth R. Banavar, T. X. Hoang, F. Seno, A. Trovato, A. Maritan
Journal of Statistical Physics 148, 636 (2012) - First-principles design of nanomachines
J. R. Banavar, M. Cieplak, T. X. Hoang, A. Maritan
Proc. Natl. Acad. Sci. USA 106, 6900-6903 (2009) - Inference of the solvation energy parameters of amino acids using maximum entropy approach
T. X. Hoang, F. Seno, A. Trovato, J. R. Banavar, A. Maritan
Journal of Chemical Physics 129, 035102 (2008) - Symmetry, shape and order
A.Trovato, T. X. Hoang, J. R. Banavar, and A. Maritan
Proc. Natl. Acad. Sci. USA 104, 19187 (2007) - Structural motifs of biomolecules
J. R. Banavar, T. X. Hoang, J. H. Maddocks, A. Maritan, C. Poletto, A. Stasiak, and A. Trovato
Proc. Natl. Acad. Sci. USA 104, 17283 (2007) - Marginal compactness of protein native structures
T. X. Hoang, A. Trovato, F. Seno, J. R. Banavar and A. Maritan
J. Phys.: Condens. Matter 18, S297 - S306 (2006) - Common attributes of native-state structures of proteins, disordered proteins, and amyloid
T. X. Hoang, L. Marsella, A. Trovato, F. Seno, J. R. Banavar, A. Maritan
Proc. Natl. Acad. Sci. USA 130, 6883-6888 (2006) - Geometry of proteins: Hydrogen bonding, sterics, and marginally compact tubes
J. R. Banavar, M. Cieplak, A. Flammini, T. X. Hoang, R. D. Kamien, T. Lezon, D. Marenduzzo, A. Maritan, F. Seno, Y. Snir and A. Trovato
Phys. Rev. E 73, 031921 (2006) - Form of growing strings
D. Marenduzzo, T. X. Hoang, F. Seno, M. Vendruscolo and A. Maritan
Phys. Rev. Lett. 95, 098103 (2005) - Mechanical properties of the domains of titin in a Go-like model
M. Cieplak, A. Pastore and T. X. Hoang
J. Chem. Phys. 112, 05906 (2005) - A new interpolation formula for semiflexible polymers
A. Rosa, T. X. Hoang, D. Marenduzzo and A. Maritan
Biophys. Chem. 115, 251-254 (2005) - Geometrical model for the native-state folds of proteins
T. X. Hoang, A. Trovato, F. Seno, J. R. Banavar and A. Maritan
Biophys. Chem. 115, 289-294 (2005) - What determines the structures of native folds of proteins?
A. Trovato, T. X. Hoang, J. R. Banavar, A. Maritan and F. Seno
J. Phys.: Cond. Matt. 17, S1515-S1522 (2005) - Protein and polymers
J. R. Banavar, T. X. Hoang and A. Maritan
J. Chem. Phys. 112, 234910 (2005) - Stretching of proteins in the entropic limit
M. Cieplak, T. X. Hoang, and M. O. Robbins
Phys. Rev. E 69, 011912 (2004) - Thermal Effects in Stretching of Go-like Models of Titin and Secondary Structures
M. Cieplak, T. X. Hoang, and M. O. Robbins
Proteins 56, 285-297 (2004) - Stretching of homopolymers and contact order
M. Cieplak, T. X. Hoang, and M. O. Robbins
Phys. Rev. E 70, 011917 (2004) - Unified perspective on proteins: A physics approach
J.R. Banavar, T.X. Hoang, A. Maritan, F. Seno, and A. Trovato
Phys. Rev. E 70, 041905 (2004) - Geometry and symmetry pre-sculpt the free energy landscape of proteins
T. X. Hoang, A. Trovato, F. Seno, J. R. Banavar, and A. Maritan
Proc. Natl. Acad. Sci. USA. 101, 7960 (2004) - Elasticity of semiflexible polymers with and without interactions
A. Rosa, T. X. Hoang, D. Marenduzzo and A. Maritan
Macromolecules 36, 10095-10102 (2003) - Folding of proteins in Go models with angular interactions
M. Cieplak, T.X. Hoang
Physica A 330, 195 (2003) - Assembly of protein tertiary structures from secondary structures using optimized potentials
T. X. Hoang, F. Seno, J.R. Banavar, M. Cieplak, A. Maritan
Proteins: Struct. Func. Gen. 52, 155 (2003) - Universality classes in protein folding times
M. Cieplak and T. X. Hoang
Biophysical Journal 84, 475 (2003) - Folding and stretching in a Go-like model of titin
M. Cieplak, T. X. Hoang, M. O. Robbins
Proteins: Struct. Func. Gen. 49, 114-124 (2002) - Thermal folding and mechanical unfolding pathways of protein secondary structures
M. Cieplak, T. X. Hoang, M. O. Robbins
Proteins: Struct. Func. Gen. 49, 104-113 (2002) - Prediction of protein secondary structures from conformational biases
T. X. Hoang, M. Cieplak, J. R. Banavar, A. Maritan
Proteins: Struct. Func. Gen. 48, 558-565 (2002) - The range of contact interactions and the kinetics of the Go models of proteins
M. Cieplak and T. X. Hoang
International Journal of Modern Physics C 13, 1231-1242 (2002) - Folding pathways of prion and doppel
G. Settanni, T. X. Hoang, C. Micheletti, A. Maritan
Biophysical Journal 83, 3533-3541 (2002) - Kinetic nonoptimality and vibrational stability of proteins
M. Cieplak, T. X. Hoang
Proteins: Struct. Func. Gen. 44, 20-25 (2001) - Spin analogues of proteins: scaling of ‘folding’ properties
T. X. Hoang, N. Sushko, M. S. Li, M. Cieplak
J. Phys. A: Math. Gen. 33, 3977-3987 (2000) - Sequencing of folding events in Go-type proteins
T. X. Hoang, M. Cieplak
Journal of Chemical Physics 113, 8319-8328 (2000) - Molecular dynamics of folding of secondary structures in Go-type models of proteins
T. X. Hoang, M. Cieplak
Journal of Chemical Physics 112, 6851-6862 (2000) - Scaling of folding properties in Go models of proteins
M. Cieplak, T. X. Hoang
Journal of Biological Physics 26, 273-294 (2000) - Energy landscapes, supergraphs, and ‘‘folding funnels’’ in spin systems
P. Garstecki, T. X. Hoang, M. Cieplak
Physical Review E 60, 3219-3226 (1999) - Scaling of folding properties in simple models of proteins
M. Cieplak, T. X. Hoang, M. S. Li
Physical Review Letters 83, 1684-1687 (1999) - Coarse grained description of protein folding
M. Cieplak, T. X. Hoang
Phys. Rev. E 58, 3589-3596 (1998) - Protein folding and models of dynamics on the lattice
T. X. Hoang, M. Cieplak
J. Chem. Phys. 109, 9192-9196 (1998)
Non-SCIE journals
- Cross-Fourier analysis for differentiating prolonged and self-terminating ventricular tachycardia in isolated rat hearts
Le Duy Manh, Bui Phuong Thuy, Bui Van Hai, Man Minh Tan, Trinh Xuan Hoang
Journal of Military Science and Technology 87, 85-93 (2023) - Effects of hydrophobic and electrostatic interactions onthe escape of nascent proteins at bacterial ribosomal exit tunnel
Bui Phuong Thuy, Le Duy Manh, Nguyen Thi Hai Yen and Trinh Xuan Hoang
Communications in Physics 33, 73-84 (2023) - Effects of macromolecular crowding on folding of small globular proteins
Nhung T. T. Nguyen, Phuong Thuy Bui, Trinh Xuan Hoang
Communications in Physics 32, 233-242 (2022) - Aggregation of zoospores on sharklet microtopographic surfaces
Nhung T. T. Nguyen and Trinh Xuan Hoang
Communications in Physics 31, 279-287 (2021) - Protein escape at an atomistic model of the ribosomal exit tunnel
Phuong Thuy Bui and Trinh Xuan Hoang
Journal of Physics: Conference Series 1506, 012022 (2020) - SAMPLING THE FOLDING TRANSITION STATE ENSEMBLE IN A TUBE-LIKE MODEL OF PROTEIN
Nguyen Ba Hung, Trinh Xuan Hoang
Communications in Physics 29, 129-139 (2019) - ADDITIVE EFFECTS OF MACROMOLECULAR CROWDING AND CONFINEMENT ON PROTEIN STABILITY
Phuong Thuy Bui and Trinh Xuan Hoang
Communications in Physics 28, 351-360 (2018) - In silico studies for the interaction of tumor necrosis factor-alpha (TNF-α) with different saponins from Vietnamese ginseng (Panax vietnamesis)
Oanh T. P. Kim, Manh D. Le, Hoang X. Trinh and Hai V. Nong
Biophysics and Physicobiology 13, 173-180 (2016) - Cascaded plasmon resonant field enhancement in protein-conjugated gold nanoparticles: Role of protein shell
Anh D. Phan, Trinh X. Hoang
Journal of Science: Advanced Materials and Devices 1, 61-64 (2016) - Aggregation of peptides in the tube model with correlated sidechain orientations
Nguyen Ba Hung and Trinh Xuan Hoang
Journal of Physics: Conference Series 627, 012028 (2015) - Effects of macromolecular crowding on protein folding
Bui Phuong Thuy, Hoang Thi Thu Huong and Trinh X Hoang
Journal of Physics: Conference Series 627, 012027 (2015) - Folding of proteins in presculpted free energy landscape
Nguyen Ba Hung, Trinh Xuan Hoang
Communications in Physics 23, 313-320 (2013) - Effects of ribosomal exit tunnel on protein
Bui Phuong Thuy and Trinh Xuan Hoang
Communications in Physics 23, 219-225 (2013) - Evolution of protein-protein interaction networks in duplication-divergence model
Bui Phuong Thuy and Trinh Xuan Hoang
Communications in Physics 22, 7-14 (2012)
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